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Database overview and statistics

Projects and runs

So far, GMrepo contains:

  • Meta data for a total of 118,965 runs (samples), belonging to 890 projects.
  • Raw data have been processed for a total of 108,176 runs (samples), belonging to 884 projects.
  • Among the processed data, microbe abundance data are available for 68,723 runs (samples), from 664 projects.
  • A total of 39,453 runs (samples), from 472 projects, failed our QC processes.

Associated human diseases

GMrepo organizes all runs (samples) into 302 associated human diseases.
In addition, the distributions of gut microbes in healthy controls are also presented.

Taxonomic classifications

Among the 68,723 runs (samples) collected in GMrepo, there are:

  • A total of 1,683 species, belonging to 1,515 genera, found:
  • Present in ≥2 samples, and
  • Have median relative abundances ≥0.01%

For more information, please refer to the All taxa page.